Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs1087574 | chr6:119159053 | G/A | 0.000271 | 483 | 16.33 | 14.23 | 21.77 | KM Plot |
| THCA | rs10875891 | chr12:49310724 | G/A | 0.00032 | 487 | 16.8 | 16.05 | 13.35 | KM Plot |
| THCA | rs10875893 | chr12:49312593 | A/G | 0.000281 | 484 | 16.73 | 16.05 | 13.35 | KM Plot |
| THCA | rs10875903 | chr12:49357887 | A/C | 0.000246 | 483 | 14.47 | 15.9 | 16.8 | KM Plot |
| THCA | rs10875904 | chr12:49357889 | A/C | 0.000246 | 483 | 14.47 | 15.9 | 16.8 | KM Plot |
| THCA | rs1088099 | chr1:45946654 | T/C | 4.23E-5 | 490 | 16.98 | 15.97 | 10.4 | KM Plot |
| THCA | rs10887920 | chr10:90924415 | C/T | 0.000311 | 482 | 15.33 | 17.85 | 14.47 | KM Plot |
| THCA | rs10887921 | chr10:90925667 | T/G | 0.000311 | 482 | 15.33 | 17.85 | 14.47 | KM Plot |
| THCA | rs10887922 | chr10:90930236 | G/A | 0.000311 | 482 | 15.33 | 17.85 | 14.47 | KM Plot |
| THCA | rs10887923 | chr10:90930404 | C/T | 0.000311 | 482 | 15.33 | 17.85 | 14.47 | KM Plot |
| THCA | rs10896598 | chr11:57052007 | C/T | 3.27E-11 | 485 | 16.23 | 14.63 | 15.58 | KM Plot |
| THCA | rs10896604 | chr11:57085213 | A/G | 5.01E-11 | 490 | 15.58 | 16.52 | 15.65 | KM Plot |
| THCA | rs10896608 | chr11:57108911 | C/T | 3.21E-6 | 490 | 16.2 | 14.9 | 27.37 | KM Plot |
| THCA | rs10897294 | chr11:62573878 | A/G | 8.19E-5 | 490 | 14.27 | 14.02 | 16.3 | KM Plot |
| THCA | rs10897295 | chr11:62577571 | A/G | 9.18E-5 | 488 | 16.2 | 14.48 | 14.27 | KM Plot |